PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022902-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bHLH
Protein Properties Length: 90aa    MW: 10202.7 Da    PI: 5.2226
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022902-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH130.000215551454
                   HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
            HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                   d+iN+   + +ellP+ + +  ++ ++ +eiL++ ++YIk L
  NNU_022902-RA 15 DEINDLVLKSQELLPEiR-RRAATGVTASEILKEICNYIKRL 55
                   678888888899999977.5566669**************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-51570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.38E-61577IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MSGSRRSEAS PLTQDEINDL VLKSQELLPE IRRRAATGVT ASEILKEICN YIKRLKREVD  60
GLSQRLSELM ASIGTNSREE EILRSLLMQE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13155RRRAATGVTASEILKEICNYIKRLK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242423.12e-57PREDICTED: transcription factor PRE6-like
SwissprotQ8GW322e-24PRE6_ARATH; Transcription factor PRE6
TrEMBLA0A0K9NKL02e-23A0A0K9NKL0_Z
STRINGPOPTR_0004s13380.12e-22(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26945.19e-26bHLH family protein